Publications

Publications (thesis, papers and preprints) in reversed chronological order.

2025

  1. Paper
    Balancing detection probability and survey effort in multistate occupancy models: A camera trap simulation analysis
    Osinga, Thomas, Knegt, Henrik J. de, Frauendorf, Magali, and Hofmeester, Tim R.
    Ecosphere Sep 2025

2024

    2023

    1. Paper
      fMRIflows: a consortium of fully automatic univariate and multivariate fMRI processing pipelines
      Notter, Michael Philipp, Herholz, Peer, Da Costa, Sandra, Gulban, Omer Faruk, Isik, Ayse Ilkay, Gaglianese, Anna, and Murray, Micah M
      Brain Topography 2023

    2022

      2021

      1. Thesis
        Innovation and standardization of processing pipelines for functional MRI data analysis
        Notter, Michael P
        University of Lausanne 2021

      2020

      1. Paper
        3-Dimensional magnetic resonance imaging of the freely moving human eye
        Franceschiello, Benedetta, Di Sopra, Lorenzo, Minier, Astrid, Ionta, Silvio, Zeugin, David, Notter, Michael P, Bastiaansen, Jessica AM, Jorge, João, Yerly, Jérôme, Stuber, Matthias, and others,
        Progress in Neurobiology 2020
      2. Paper
        Temporo-parietal contribution to the mental representations of self/other face
        Zeugin, David, Notter, Michael P, Knebel, Jean-François, and Ionta, Silvio
        Brain and Cognition 2020
      3. Paper
        Variability in the analysis of a single neuroimaging dataset by many teams
        Botvinik-Nezer, Rotem, Holzmeister, Felix, Camerer, Colin F, Dreber, Anna, Huber, Juergen, Johannesson, Magnus, Kirchler, Michael, Iwanir, Roni, Mumford, Jeanette A, Adcock, R Alison, Notter, Michael P, and others,
        Nature 2020

      2019

      1. Paper
        Motion-Resolved 3D Magnetic Resonance Imaging Of The Human Eye
        Franceschiello, Benedetta, Di Sopra, Lorenzo, Ionta, Silvio, Zeugin, David, Notter, Michael, Bastiaansen, Jessica AM, Jorge, Joao, Yerly, Jerome, Stuber, Matthias, and Murray, Micah
        Investigative Ophthalmology & Visual Science 2019
      2. Paper
        AtlasReader: A Python package to generate coordinate tables, region labels, and informative figures from statistical MRI images
        Notter, Michael, Gale, Dan, Herholz, Peer, Markello, Ross, Notter-Bielser, Marie-Laure, and Whitaker, Kirstie
        Journal of Open Source Software 2019
      3. Paper
        Encoding of auditory temporal gestalt in the human brain
        Notter, Michael P, Hanke, Michael, Murray, Micah M, and Geiser, Eveline
        Cerebral Cortex 2019
      4. Paper
        PyBIDS: Python tools for BIDS datasets
        Yarkoni, Tal, Markiewicz, Christopher J, Vega, Alejandro, Gorgolewski, Krzysztof J, Salo, Taylor, Halchenko, Yaroslav O, McNamara, Quinten, DeStasio, Krista, Poline, Jean-Baptiste, Petrov, Dmitry, and others,
        Journal of open source software 2019

      2018

      1. OpenSource
        STEN 2.0: Statistical Toolbox for Electrical Neuroimaging
        Knebel, Jean-François, and Notter, Michael P
        2018

      2017

      1. Paper
        Reshaping the brain after stroke: The effect of prismatic adaptation in patients with right brain damage
        Crottaz-Herbette, Sonia, Fornari, Eleonora, Notter, Michael P, Bindschaedler, Claire, Manzoni, Laura, and Clarke, Stephanie
        Neuropsychologia 2017
      2. Paper
        Implicit self-other discrimination affects the interplay between multisensory affordances of mental representations of faces
        Zeugin, David, Arfa, Norhan, Notter, Michael, Murray, Micah M, and Ionta, Silvio
        Behavioural brain research 2017
      3. OpenSource
        Pupillometry Analyzer: a lightweight matlab tool to pre-process pupillometry data
        Notter, Michael P, and Murray, Micah M
        2017
      4. OpenSource
        LINEViewer: a Python based EEG analysis tool for a rough data overview
        Notter, Michael P, Knebel, Jean-François, and Murray, Micah M
        2017
      5. OpenSource
        Brains for Publication
        Whitaker, Kirstie J, Notter, Michael P, and Morgan, Sarah
        2017

      2016

        2015

        1. OpenSource
          PyMVPA
          Halchenko, Yaroslav, Hanke, Michael, Oosterhof, Nikolaas N., Olivetti, Emanuele, Sederberg, Per B., Guntupalli, Swaroop, Zito, Tiziano, Haenel, Valentin, Buchholz, Sven, dinga92, , and others,
          2015